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Studies of these biomolecules in vivo are further complicated by striking variations between laboratory mouse strains. These data underscore the importance of careful attention to method primer choice, proximal vs. The intestinal mucosa of mammals is a site of remarkably complex and vitally important host-microbe interactions 1. The intestinal tract harbors a diverse, abundant and dynamic group of microorganisms, which can have profound effects on host nutrition, physiology and immune response 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9.
While the host derives many benefits from mutualistic interactions with various gut microbes, disruption of this community, termed dysbiosis, creates niche opportunities for the proliferative expansion of noxious organisms that compromise homeostasis and can cause disease 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 , 21 , 22 , Accumulating evidence indicates that the host orchestrates mucosal homeostasis by accommodating and shaping the composition of contiguous microbial populations 16 , 24 , 25 , 26 , In the mammalian small intestine, one influential host factor of this ecosystem is a collection of proteins and peptides secreted by Paneth cells 28 , 29 , Mice are the most widely studied species to model acute and chronic disease Many valuable insights on enteric host-microbe interplay have stemmed from, and depend on, investigation of mouse models.
To address this problem, Menendez, et al. This categorization enabled Menendez et al. Several years ago, our laboratory developed a robust qRT-PCR approach using external cDNA standards that readily permits quantitative comparisons of mRNA expression for genes encoding antimicrobial peptides in tissues from diverse specimens and experimental influences The latter included expression along the small intestinal tract, during postnatal development, in mice with genetic knockout of the gene encoding myeloid differentiation primary response 88 MyD88 , and in germ-free mice, as well as in mice following streptomycin treatment.